HL_1J5A_011

3D structure

PDB id

1J5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUGAGAGUC

Length

9 nucleotides

Bulged bases

1J5A|1|A|G|340, 1J5A|1|A|A|341, 1J5A|1|A|G|342

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1J5A_011 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.2509

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

1J5A|1|A|G|338
1J5A|1|A|U|339
1J5A|1|A|G|340
1J5A|1|A|A|341
1J5A|1|A|G|342
1J5A|1|A|A|343
1J5A|1|A|G|344
1J5A|1|A|U|345
1J5A|1|A|C|346

Current chains

Chain A

23S RRNA

Nearby chains

Chain K

RIBOSOMAL PROTEIN L4