HL_1J5A_027

3D structure

PDB id

1J5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAAACAAC

Length

8 nucleotides

Bulged bases

1J5A|1|A|A|991

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1J5A_027 not in the Motif Atlas

Homologous match to HL_7A0S_027

Geometric discrepancy: 0.2161

The information below is about HL_7A0S_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47171.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

1J5A|1|A|G|989
1J5A|1|A|A|990
1J5A|1|A|A|991
1J5A|1|A|A|992
1J5A|1|A|C|993
1J5A|1|A|A|994
1J5A|1|A|A|995
1J5A|1|A|C|996

Current chains

Chain A

23S RRNA

Nearby chains