HL_1J5A_032

3D structure

PDB id

1J5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1J5A_032 not in the Motif Atlas

Homologous match to HL_7A0S_032

Geometric discrepancy: 0.1984

The information below is about HL_7A0S_032

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

96

Unit IDs

1J5A|1|A|G|1294
1J5A|1|A|U|1295
1J5A|1|A|G|1296
1J5A|1|A|A|1297
1J5A|1|A|G|1298
1J5A|1|A|A|1299
1J5A|1|A|A|1300
1J5A|1|A|U|1301
1J5A|1|A|C|1302

Current chains

Chain A

23S RRNA

Nearby chains

Chain L

RIBOSOMAL PROTEIN L22