HL_1J5A_049

3D structure

PDB id

1J5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUAAAGAUGC

Length

10 nucleotides

Bulged bases

1J5A|1|A|A|2013, 1J5A|1|A|A|2014, 1J5A|1|A|G|2015, 1J5A|1|A|U|2017, 1J5A|1|A|G|2018

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1J5A_049 not in the Motif Atlas

Homologous match to HL_7RQB_050

Geometric discrepancy: 0.2556

The information below is about HL_7RQB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

1J5A|1|A|G|2010
1J5A|1|A|U|2011
1J5A|1|A|A|2012
1J5A|1|A|A|2013
1J5A|1|A|A|2014
1J5A|1|A|G|2015
1J5A|1|A|A|2016
1J5A|1|A|U|2017
1J5A|1|A|G|2018
1J5A|1|A|C|2019

Current chains

Chain A

23S RRNA

Nearby chains