HL_1J5A_053

3D structure

PDB id

1J5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CCAAAAUGUAACG

Length

13 nucleotides

Bulged bases

1J5A|1|A|A|2247, 1J5A|1|A|C|2254

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1J5A_053 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.1481

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

1J5A|1|A|C|2243
1J5A|1|A|C|2244
1J5A|1|A|A|2245
1J5A|1|A|A|2246
1J5A|1|A|A|2247
1J5A|1|A|A|2248
1J5A|1|A|U|2249
1J5A|1|A|G|2250
1J5A|1|A|U|2251
1J5A|1|A|A|2252
1J5A|1|A|A|2253
1J5A|1|A|C|2254
1J5A|1|A|G|2255

Current chains

Chain A

23S RRNA

Nearby chains