HL_1J5A_058

3D structure

PDB id

1J5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGUGUGGAAG

Length

10 nucleotides

Bulged bases

1J5A|1|A|U|2385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1J5A_058 not in the Motif Atlas

Homologous match to HL_7A0S_058

Geometric discrepancy: 0.1569

The information below is about HL_7A0S_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

1J5A|1|A|C|2383
1J5A|1|A|G|2384
1J5A|1|A|U|2385
1J5A|1|A|G|2386
1J5A|1|A|U|2387
1J5A|1|A|G|2388
1J5A|1|A|G|2389
1J5A|1|A|A|2390
1J5A|1|A|A|2391
1J5A|1|A|G|2392

Current chains

Chain A

23S RRNA

Nearby chains