HL_1J5A_069

3D structure

PDB id

1J5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

1J5A|1|A|A|173, 1J5A|1|A|A|176

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1J5A_069 not in the Motif Atlas

Homologous match to HL_4WF9_006

Geometric discrepancy: 0.3148

The information below is about HL_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

1J5A|1|A|G|171
1J5A|1|A|A|172
1J5A|1|A|A|173
1J5A|1|A|A|174
1J5A|1|A|C|175
1J5A|1|A|A|176
1J5A|1|A|U|177
1J5A|1|A|C|178

Current chains

Chain A

23S RRNA

Nearby chains