HL_1JJ2_032

3D structure

PDB id

1JJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fully Refined Crystal Structure of the Haloarcula marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

ACUCAUACU

Length

9 nucleotides

Bulged bases

1JJ2|1|0|U|1279

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1JJ2_032 not in the Motif Atlas

Homologous match to HL_4V9F_032

Geometric discrepancy: 0.0404

The information below is about HL_4V9F_032

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_87306.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

1JJ2|1|0|A|1274
1JJ2|1|0|C|1275
1JJ2|1|0|U|1276
1JJ2|1|0|C|1277
1JJ2|1|0|A|1278
1JJ2|1|0|U|1279
1JJ2|1|0|A|1280
1JJ2|1|0|C|1281
1JJ2|1|0|U|1282

Current chains

Chain 0

23S RRNA

Nearby chains

Chain N

RIBOSOMAL PROTEIN L18E

Chain X

RIBOSOMAL PROTEIN L32E