HL_1K8A_018
3D structure
- PDB id
- 1K8A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystal structure of Carbomycin A bound to the 50S ribosomal subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UUUUGAAAAA
- Length
- 10 nucleotides
- Bulged bases
- 1K8A|1|A|A|631
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1K8A_018 not in the Motif Atlas
- Geometric match to HL_7RQB_018
- Geometric discrepancy: 0.2117
- The information below is about HL_7RQB_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_41998.1
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 69
Unit IDs
1K8A|1|A|U|623
1K8A|1|A|U|624
1K8A|1|A|U|625
1K8A|1|A|U|626
1K8A|1|A|G|627
1K8A|1|A|A|628
1K8A|1|A|A|629
1K8A|1|A|A|630
1K8A|1|A|A|631
1K8A|1|A|A|632
Current chains
- Chain A
- 23S RRNA
Nearby chains
- Chain D
- RIBOSOMAL PROTEIN L3
- Chain M
- RIBOSOMAL PROTEIN L15
- Chain Z
- RIBOSOMAL PROTEIN L32E
Coloring options: