HL_1KC8_032

3D structure

PDB id

1KC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal Structure of Blasticidin S Bound to the 50S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.01 Å

Loop

Sequence

ACUCAUACU

Length

9 nucleotides

Bulged bases

1KC8|1|A|U|1279

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1KC8_032 not in the Motif Atlas

Homologous match to HL_4V9F_032

Geometric discrepancy: 0.0454

The information below is about HL_4V9F_032

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_77082.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

8

Unit IDs

1KC8|1|A|A|1274
1KC8|1|A|C|1275
1KC8|1|A|U|1276
1KC8|1|A|C|1277
1KC8|1|A|A|1278
1KC8|1|A|U|1279
1KC8|1|A|A|1280
1KC8|1|A|C|1281
1KC8|1|A|U|1282

Current chains

Chain A

23S RRNA

Nearby chains

Chain P

RIBOSOMAL PROTEIN L18E

Chain Z

RIBOSOMAL PROTEIN L32E