HL_1M5O_005

3D structure

PDB id

1M5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Transition State Stabilization by a Catalytic RNA

Experimental method

X-RAY DIFFRACTION

Resolution

2.2 Å

Loop

Sequence

GGGAAACU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1M5O_005 not in the Motif Atlas

Geometric match to HL_6CZR_215

Geometric discrepancy: 0.3212

The information below is about HL_6CZR_215

Detailed Annotation

GNRA with extra near cWW

Broad Annotation

GNRA with extra near cWW

Motif group

HL_82182.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

1M5O|1|E|G|73
1M5O|1|E|G|74
1M5O|1|E|G|75
1M5O|1|E|A|76
1M5O|1|E|A|77
1M5O|1|E|A|78
1M5O|1|E|C|79
1M5O|1|E|U|80

Current chains

Chain E

RNA HAIRPIN RIBOZYME

Nearby chains