1M5O Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_1M5O_001 | 1/B/35:46 | U1 small nuclear ribonucleoprotein A binding hairpin | geometric HL_1M5K_002 HL_36992.2 | |
| HL_1M5O_003 | 1/E/35:46 | No text annotation | geometric HL_4WF9_003 HL_75660.7 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_1M5O_002 | GNRA | ||
| HL_1M5O_005 | GNRA with extra near cWW | ||
| HL_1M5O_004 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_1M5O_001 | 1/A/11:16, 1/B/6:11 | No text annotation | geometric IL_3GS5_001 NA | |
| IL_1M5O_002 | 1/B/19:27, 1/B/54:64 | No text annotation | geometric IL_2P7E_001 IL_60797.2 | |
| IL_1M5O_004 | 1/D/11:16, 1/E/6:11 | No text annotation | geometric IL_3GS5_001 NA | |
| IL_1M5O_005 | 1/E/19:27, 1/E/54:64 | No text annotation | geometric IL_1M5K_003 IL_60797.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_1M5O_003 | Isolated cWH basepair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J4_1M5O_003 | 1/A/7:8, 1/B/14:15, 1/B/68:69, 1/B/84:85 | No text annotation | ||
| J4_1M5O_001 | 1/A/7:9, 1/B/13:15, 1/B/68:69, 1/B/84:85 | No text annotation | ||
| J4_1M5O_002 | 1/D/7:8, 1/E/14:15, 1/E/68:69, 1/E/84:85 | No text annotation |
Problematic loops
No problematic loops
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