HL_1M90_032

3D structure

PDB id

1M90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of CCA-Phe-caproic acid-biotin and sparsomycin bound to the 50S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

ACUCAUACU

Length

9 nucleotides

Bulged bases

1M90|1|A|U|1279

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1M90_032 not in the Motif Atlas

Homologous match to HL_4V9F_032

Geometric discrepancy: 0.0405

The information below is about HL_4V9F_032

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_77082.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

8

Unit IDs

1M90|1|A|A|1274
1M90|1|A|C|1275
1M90|1|A|U|1276
1M90|1|A|C|1277
1M90|1|A|A|1278
1M90|1|A|U|1279
1M90|1|A|A|1280
1M90|1|A|C|1281
1M90|1|A|U|1282

Current chains

Chain A

23S RRNA

Nearby chains

Chain P

RIBOSOMAL PROTEIN L18E

Chain Z

RIBOSOMAL PROTEIN L32E