3D structure

PDB id
1ML5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the E. coli ribosomal termination complex with release factor 2
Experimental method
ELECTRON MICROSCOPY
Resolution
14 Å

Loop

Sequence
AGA(OMC)U(OMG)AA(YG)A(PSU)(5MC)U
Length
13 nucleotides
Bulged bases
1ML5|1|B|A|38
QA status
Modified nucleotides: OMC, OMG, YG, PSU, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_1ML5_002 not in the Motif Atlas
Homologous match to HL_6GSL_221
Geometric discrepancy: 0.4703
The information below is about HL_6GSL_221
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_06285.3
Basepair signature
cWW-cWW-F-F-tSH-F-F-F-F-F
Number of instances in this motif group
6

Unit IDs

1ML5|1|B|A|29
1ML5|1|B|G|30
1ML5|1|B|A|31
1ML5|1|B|OMC|32
1ML5|1|B|U|33
1ML5|1|B|OMG|34
1ML5|1|B|A|35
1ML5|1|B|A|36
1ML5|1|B|YG|37
1ML5|1|B|A|38
1ML5|1|B|PSU|39
1ML5|1|B|5MC|40
1ML5|1|B|U|41

Current chains

Chain B
T-RNA(PHE)

Nearby chains

Chain A
Small subunit ribosomal RNA; SSU rRNA
Chain C
A- AND P-SITE MESSENGER RNA CODONS
Chain L
30S RIBOSOMAL PROTEIN S9
Chain P
30S RIBOSOMAL PROTEIN S13

Coloring options:


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