HL_1N36_009

3D structure

PDB id

1N36 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit in the presence of crystallographically disordered codon and near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

CCUACGGG

Length

8 nucleotides

Bulged bases

1N36|1|A|A|344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1N36_009 not in the Motif Atlas

Geometric match to HL_7MLW_004

Geometric discrepancy: 0.2533

The information below is about HL_7MLW_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_83003.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

6

Unit IDs

1N36|1|A|C|341
1N36|1|A|C|342
1N36|1|A|U|343
1N36|1|A|A|344
1N36|1|A|C|345
1N36|1|A|G|346
1N36|1|A|G|347
1N36|1|A|G|348

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains