HL_1N36_010

3D structure

PDB id

1N36 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit in the presence of crystallographically disordered codon and near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

UGGGCGCAAGCCUGA

Length

15 nucleotides

Bulged bases

1N36|1|A|G|388

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1N36_010 not in the Motif Atlas

Geometric match to HL_5J7L_022

Geometric discrepancy: 0.3737

The information below is about HL_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06285.3

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

1N36|1|A|U|375
1N36|1|A|G|376
1N36|1|A|G|377
1N36|1|A|G|378
1N36|1|A|C|379
1N36|1|A|G|380
1N36|1|A|C|381
1N36|1|A|A|382
1N36|1|A|A|383
1N36|1|A|G|384
1N36|1|A|C|385
1N36|1|A|C|386
1N36|1|A|U|387
1N36|1|A|G|388
1N36|1|A|A|389

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain P

30S RIBOSOMAL PROTEIN S16