HL_1N36_026

3D structure

PDB id

1N36 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit in the presence of crystallographically disordered codon and near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

GUUCGGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1N36_026 not in the Motif Atlas

Geometric match to HL_4V9F_005

Geometric discrepancy: 0.3766

The information below is about HL_4V9F_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13184.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

1N36|1|A|G|1134
1N36|1|A|U|1135
1N36|1|A|U|1136
1N36|1|A|C|1137
1N36|1|A|G|1138
1N36|1|A|G|1139
1N36|1|A|C|1140

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain I

30S RIBOSOMAL PROTEIN S9