HL_1NJP_044

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUUUACCAAAAUC

Length

13 nucleotides

Bulged bases

1NJP|1|0|A|1771, 1NJP|1|0|C|1772, 1NJP|1|0|C|1773, 1NJP|1|0|A|1775, 1NJP|1|0|A|1777

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NJP_044 not in the Motif Atlas

Homologous match to HL_7A0S_045

Geometric discrepancy: 0.2906

The information below is about HL_7A0S_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50951.1

Basepair signature

cWW-F-F-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

1NJP|1|0|G|1767
1NJP|1|0|U|1768
1NJP|1|0|U|1769
1NJP|1|0|U|1770
1NJP|1|0|A|1771
1NJP|1|0|C|1772
1NJP|1|0|C|1773
1NJP|1|0|A|1774
1NJP|1|0|A|1775
1NJP|1|0|A|1776
1NJP|1|0|A|1777
1NJP|1|0|U|1778
1NJP|1|0|C|1779

Current chains

Chain 0

23S ribosomal RNA

Nearby chains