Motif HL_50951.1 Version HL_50951.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-7 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_7A0S_045 | 7A0S | 0.6728 | 4 | X | LSU rRNA | G | 1767 | U | 1768 | U | 1769 | U | 1770 | C | 1773 | A | 1774 | A | 1776 | U | 1778 | C | 1779 | cWW | ncwW | tWH |
| 2 | HL_8GLP_127 | 8GLP | 0.2119 | 3 | S2 | SSU rRNA | A | 1614 | U | 1615 | U | 1616 | G | 1617 | C | 1618 | A | 1619 | A | 1620 | U | 1624 | PSU | 1625 | cWW | tWH | |
| 3 | HL_8CRE_223 | 8CRE | 0.0000 | 3 | CM | SSU rRNA | A | 1537 | U | 1538 | U | 1539 | G | 1540 | U | 1541 | A | 1542 | A | 1543 | U | 1547 | U | 1548 | cWW | ncWH | tWH |
| 4 | HL_8P9A_222 | 8P9A | 0.0953 | 3 | sR | SSU rRNA | A | 1550 | U | 1551 | U | 1552 | G | 1553 | U | 1554 | A | 1555 | A | 1556 | U | 1560 | U | 1561 | cWW | ncWH | tWH |
| 5 | HL_4V7M_040 | 4V7M | 0.5006 | 2 | AY | tRNA | G | 51 | G | 52 | U | 53 | U | 54 | C | 55 | G | 56 | A | 57 | C | 60 | C | 61 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUUACCAAAAUC | 1 |
| AUUGCAAUUAU(PSU) | 1 |
| AUUGUAAUUGUU | 1 |
| AUUGUAAUUAUU | 1 |
| GGUUCGAAUCC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUUACCAAAAU | 1 |
| UUGCAAUUAU | 1 |
| UUGUAAUUGU | 1 |
| UUGUAAUUAU | 1 |
| GUUCGAAUC | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Heat map statistics
- Min 0.10 | Avg 0.42 | Max 1.00
Coloring options: