HL_1NKW_007

3D structure

PDB id

1NKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAGAAUUC

Length

8 nucleotides

Bulged bases

1NKW|1|0|U|206

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NKW_007 not in the Motif Atlas

Geometric match to HL_3SKL_006

Geometric discrepancy: 0.3929

The information below is about HL_3SKL_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

1NKW|1|0|G|201
1NKW|1|0|A|202
1NKW|1|0|G|203
1NKW|1|0|A|204
1NKW|1|0|A|205
1NKW|1|0|U|206
1NKW|1|0|U|207
1NKW|1|0|C|208

Current chains

Chain 0

23S ribosomal RNA

Nearby chains