HL_1NKW_016

3D structure

PDB id

1NKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCUUAUGCG

Length

9 nucleotides

Bulged bases

1NKW|1|0|C|553, 1NKW|1|0|U|554, 1NKW|1|0|U|555, 1NKW|1|0|G|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NKW_016 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.2899

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

1NKW|1|0|C|552
1NKW|1|0|C|553
1NKW|1|0|U|554
1NKW|1|0|U|555
1NKW|1|0|A|556
1NKW|1|0|U|557
1NKW|1|0|G|558
1NKW|1|0|C|559
1NKW|1|0|G|560

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L21