HL_1NKW_023

3D structure

PDB id

1NKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUGAGG

Length

6 nucleotides

Bulged bases

1NKW|1|0|U|840, 1NKW|1|0|G|843

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NKW_023 not in the Motif Atlas

Geometric match to HL_7A0S_024

Geometric discrepancy: 0.2154

The information below is about HL_7A0S_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_55195.3

Basepair signature

cWW-F

Number of instances in this motif group

6

Unit IDs

1NKW|1|0|U|839
1NKW|1|0|U|840
1NKW|1|0|G|841
1NKW|1|0|A|842
1NKW|1|0|G|843
1NKW|1|0|G|844

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L15