HL_1NKW_027

3D structure

PDB id

1NKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

1NKW|1|0|A|1081, 1NKW|1|0|G|1082, 1NKW|1|0|C|1083

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NKW_027 not in the Motif Atlas

Homologous match to HL_6PRV_001

Geometric discrepancy: 0.4365

The information below is about HL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

1NKW|1|0|C|1075
1NKW|1|0|U|1076
1NKW|1|0|U|1077
1NKW|1|0|A|1078
1NKW|1|0|G|1079
1NKW|1|0|A|1080
1NKW|1|0|A|1081
1NKW|1|0|G|1082
1NKW|1|0|C|1083
1NKW|1|0|A|1084
1NKW|1|0|G|1085

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L11

Chain T

general stress protein CTC