HL_1NKW_041

3D structure

PDB id

1NKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUUCG

Length

5 nucleotides

Bulged bases

1NKW|1|0|U|1733, 1NKW|1|0|C|1734

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NKW_041 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.3526

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

1NKW|1|0|C|1731
1NKW|1|0|U|1732
1NKW|1|0|U|1733
1NKW|1|0|C|1734
1NKW|1|0|G|1735

Current chains

Chain 0

23S ribosomal RNA

Nearby chains