HL_1NKW_063

3D structure

PDB id

1NKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

1NKW|1|0|A|2730, 1NKW|1|0|G|2731, 1NKW|1|0|C|2735, 1NKW|1|0|A|2737

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NKW_063 not in the Motif Atlas

Homologous match to HL_7A0S_065

Geometric discrepancy: 0.4807

The information below is about HL_7A0S_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

1NKW|1|0|C|2725
1NKW|1|0|U|2726
1NKW|1|0|G|2727
1NKW|1|0|A|2728
1NKW|1|0|A|2729
1NKW|1|0|A|2730
1NKW|1|0|G|2731
1NKW|1|0|C|2732
1NKW|1|0|A|2733
1NKW|1|0|U|2734
1NKW|1|0|C|2735
1NKW|1|0|U|2736
1NKW|1|0|A|2737
1NKW|1|0|A|2738
1NKW|1|0|G|2739

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain E

50S ribosomal protein L6

Chain H

50S ribosomal protein L13