HL_1NKW_070

3D structure

PDB id

1NKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUGAGAGUC

Length

9 nucleotides

Bulged bases

1NKW|1|0|G|340, 1NKW|1|0|A|341, 1NKW|1|0|G|342

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NKW_070 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.3964

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

1NKW|1|0|G|338
1NKW|1|0|U|339
1NKW|1|0|G|340
1NKW|1|0|A|341
1NKW|1|0|G|342
1NKW|1|0|A|343
1NKW|1|0|G|344
1NKW|1|0|U|345
1NKW|1|0|C|346

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain S

50S ribosomal protein L24