HL_1NWY_016

3D structure

PDB id

1NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CCUUAUGCG

Length

9 nucleotides

Bulged bases

1NWY|1|0|C|553, 1NWY|1|0|U|554, 1NWY|1|0|U|555, 1NWY|1|0|G|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NWY_016 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3192

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

1NWY|1|0|C|552
1NWY|1|0|C|553
1NWY|1|0|U|554
1NWY|1|0|U|555
1NWY|1|0|A|556
1NWY|1|0|U|557
1NWY|1|0|G|558
1NWY|1|0|C|559
1NWY|1|0|G|560

Current chains

Chain 0

23S RIBOSOMAL RRNA

Nearby chains

Chain P

ribosomal protein L21