HL_1NWY_043

3D structure

PDB id

1NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUUUACCAAAAUC

Length

13 nucleotides

Bulged bases

1NWY|1|0|A|1771, 1NWY|1|0|C|1772, 1NWY|1|0|C|1773, 1NWY|1|0|A|1777

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NWY_043 not in the Motif Atlas

Homologous match to HL_7A0S_045

Geometric discrepancy: 0.3147

The information below is about HL_7A0S_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50951.2

Basepair signature

cWW-F-F-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

1NWY|1|0|G|1767
1NWY|1|0|U|1768
1NWY|1|0|U|1769
1NWY|1|0|U|1770
1NWY|1|0|A|1771
1NWY|1|0|C|1772
1NWY|1|0|C|1773
1NWY|1|0|A|1774
1NWY|1|0|A|1775
1NWY|1|0|A|1776
1NWY|1|0|A|1777
1NWY|1|0|U|1778
1NWY|1|0|C|1779

Current chains

Chain 0

23S RIBOSOMAL RRNA

Nearby chains

Chain 2

ribosomal protein L34

Chain A

ribosomal protein L2