HL_1NWY_069

3D structure

PDB id

1NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUGAGAGUC

Length

9 nucleotides

Bulged bases

1NWY|1|0|G|340, 1NWY|1|0|A|341, 1NWY|1|0|G|342

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NWY_069 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.4008

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

1NWY|1|0|G|338
1NWY|1|0|U|339
1NWY|1|0|G|340
1NWY|1|0|A|341
1NWY|1|0|G|342
1NWY|1|0|A|343
1NWY|1|0|G|344
1NWY|1|0|U|345
1NWY|1|0|C|346

Current chains

Chain 0

23S RIBOSOMAL RRNA

Nearby chains

Chain C

ribosomal protein L4

Chain S

ribosomal protein L24