HL_1NYB_009

3D structure

PDB id

1NYB (explore in PDB, NAKB, or RNA 3D Hub)

Description

SOLUTION STRUCTURE OF THE BACTERIOPHAGE PHI21 N PEPTIDE-BOXB RNA COMPLEX

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

UCUAACCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NYB_009 not in the Motif Atlas

Geometric match to HL_4V9F_032

Geometric discrepancy: 0.3215

The information below is about HL_4V9F_032

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_87306.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

1NYB|9|B|U|9
1NYB|9|B|C|10
1NYB|9|B|U|11
1NYB|9|B|A|12
1NYB|9|B|A|13
1NYB|9|B|C|14
1NYB|9|B|C|15
1NYB|9|B|G|16

Current chains

Chain B

BoxB RNA

Nearby chains

Chain A

Probable regulatory protein N