HL_1OLN_002

3D structure

PDB id

1OLN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model for thiostrepton antibiotic binding to L11 substrate from 50S ribosomal RNA

Experimental method

SOLUTION NMR, THEORETICAL MODEL

Resolution

Loop

Sequence

CGUAACAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1OLN_002 not in the Motif Atlas

Homologous match to HL_6PRV_002

Geometric discrepancy: 0.0757

The information below is about HL_6PRV_002

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

1OLN|1|C|C|1092
1OLN|1|C|G|1093
1OLN|1|C|U|1094
1OLN|1|C|A|1095
1OLN|1|C|A|1096
1OLN|1|C|C|1097
1OLN|1|C|A|1098
1OLN|1|C|G|1099

Current chains

Chain C

RNA

Nearby chains

Chain A

50S RIBOSOMAL PROTEIN L11

Chain B

THIOSTREPTON