HL_1Q7Y_032

3D structure

PDB id

1Q7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of CCdAP-Puromycin bound at the Peptidyl transferase center of the 50S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

ACUCAUACU

Length

9 nucleotides

Bulged bases

1Q7Y|1|A|U|1279

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1Q7Y_032 not in the Motif Atlas

Homologous match to HL_4V9F_032

Geometric discrepancy: 0.0477

The information below is about HL_4V9F_032

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_87306.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

1Q7Y|1|A|A|1274
1Q7Y|1|A|C|1275
1Q7Y|1|A|U|1276
1Q7Y|1|A|C|1277
1Q7Y|1|A|A|1278
1Q7Y|1|A|U|1279
1Q7Y|1|A|A|1280
1Q7Y|1|A|C|1281
1Q7Y|1|A|U|1282

Current chains

Chain A

23S ribosomal rna

Nearby chains

Chain P

50S ribosomal protein L18e

Chain Z

50S ribosomal protein L32E