HL_1Q86_018

3D structure

PDB id

1Q86 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of CCA-Phe-cap-biotin bound simultaneously at half occupancy to both the A-site and P-site of the the 50S ribosomal Subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUUUGAAAAA

Length

10 nucleotides

Bulged bases

1Q86|1|A|A|631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1Q86_018 not in the Motif Atlas

Geometric match to HL_7RQB_018

Geometric discrepancy: 0.2148

The information below is about HL_7RQB_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41998.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

69

Unit IDs

1Q86|1|A|U|623
1Q86|1|A|U|624
1Q86|1|A|U|625
1Q86|1|A|U|626
1Q86|1|A|G|627
1Q86|1|A|A|628
1Q86|1|A|A|629
1Q86|1|A|A|630
1Q86|1|A|A|631
1Q86|1|A|A|632

Current chains

Chain A

23S ribosomal rna

Nearby chains

Chain D

50S ribosomal protein L3P

Chain M

50S ribosomal protein L15P

Chain Z

50S ribosomal protein L32E