HL_1Q86_068

3D structure

PDB id

1Q86 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of CCA-Phe-cap-biotin bound simultaneously at half occupancy to both the A-site and P-site of the the 50S ribosomal Subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUGAACGCAUCUAAG

Length

15 nucleotides

Bulged bases

1Q86|1|A|G|2786, 1Q86|1|A|C|2790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1Q86_068 not in the Motif Atlas

Homologous match to HL_4V9F_068

Geometric discrepancy: 0.0401

The information below is about HL_4V9F_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

1Q86|1|A|C|2780
1Q86|1|A|U|2781
1Q86|1|A|G|2782
1Q86|1|A|A|2783
1Q86|1|A|A|2784
1Q86|1|A|C|2785
1Q86|1|A|G|2786
1Q86|1|A|C|2787
1Q86|1|A|A|2788
1Q86|1|A|U|2789
1Q86|1|A|C|2790
1Q86|1|A|U|2791
1Q86|1|A|A|2792
1Q86|1|A|A|2793
1Q86|1|A|G|2794

Current chains

Chain A

23S ribosomal rna

Nearby chains

Chain G

50S ribosomal protein L6P

Chain K

50S ribosomal protein L13P