HL_1QVF_032

3D structure

PDB id

1QVF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a deacylated tRNA minihelix bound to the E site of the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

ACUCAUACU

Length

9 nucleotides

Bulged bases

1QVF|1|0|U|1279

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1QVF_032 not in the Motif Atlas

Homologous match to HL_4V9F_032

Geometric discrepancy: 0.0376

The information below is about HL_4V9F_032

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_77082.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

8

Unit IDs

1QVF|1|0|A|1274
1QVF|1|0|C|1275
1QVF|1|0|U|1276
1QVF|1|0|C|1277
1QVF|1|0|A|1278
1QVF|1|0|U|1279
1QVF|1|0|A|1280
1QVF|1|0|C|1281
1QVF|1|0|U|1282

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain N

50S ribosomal protein L18e

Chain X

50S ribosomal protein L32E