HL_1RY1_002

3D structure

PDB id

1RY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the signal recognition particle interacting with the elongation-arrested ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

12 Å

Loop

Sequence

CAGCUACUCG

Length

10 nucleotides

Bulged bases

1RY1|1|E|U|138, 1RY1|1|E|C|139

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1RY1_002 not in the Motif Atlas

Geometric match to HL_1E8O_002

Geometric discrepancy: 0.0003

The information below is about HL_1E8O_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_73255.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

1RY1|1|E|C|131
1RY1|1|E|A|132
1RY1|1|E|G|133
1RY1|1|E|C|134
1RY1|1|E|U|135
1RY1|1|E|A|136
1RY1|1|E|C|137
1RY1|1|E|U|138
1RY1|1|E|C|139
1RY1|1|E|G|140

Current chains

Chain E

SRP Alu domain

Nearby chains