HL_1SM1_048

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

1SM1|1|0|U|1938

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1SM1_048 not in the Motif Atlas

Homologous match to HL_7A0S_048

Geometric discrepancy: 0.2641

The information below is about HL_7A0S_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

1SM1|1|0|G|1932
1SM1|1|0|G|1933
1SM1|1|0|U|1934
1SM1|1|0|A|1935
1SM1|1|0|A|1936
1SM1|1|0|G|1937
1SM1|1|0|U|1938
1SM1|1|0|U|1939
1SM1|1|0|C|1940

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain I

50S RIBOSOMAL PROTEIN L14