HL_1SM1_059

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

UGAAGAAG

Length

8 nucleotides

Bulged bases

1SM1|1|0|G|2508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1SM1_059 not in the Motif Atlas

Homologous match to HL_7A0S_060

Geometric discrepancy: 0.2089

The information below is about HL_7A0S_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

1SM1|1|0|U|2507
1SM1|1|0|G|2508
1SM1|1|0|A|2509
1SM1|1|0|A|2510
1SM1|1|0|G|2511
1SM1|1|0|A|2512
1SM1|1|0|A|2513
1SM1|1|0|G|2514

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 4

50S RIBOSOMAL PROTEIN L36

Chain E

50S RIBOSOMAL PROTEIN L6