HL_1SYZ_001

3D structure

PDB id

1SYZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution structure of the S. Cerevisiae U6 intramolecular stem loop (ISL) RNA at pH 5.7

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

UGCAUAA

Length

7 nucleotides

Bulged bases

1SYZ|1|A|U|13

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1SYZ_001 not in the Motif Atlas

Geometric match to HL_5TBW_012

Geometric discrepancy: 0.2922

The information below is about HL_5TBW_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.1

Basepair signature

cWW-F-F

Number of instances in this motif group

7

Unit IDs

1SYZ|1|A|U|9
1SYZ|1|A|G|10
1SYZ|1|A|C|11
1SYZ|1|A|A|12
1SYZ|1|A|U|13
1SYZ|1|A|A|14
1SYZ|1|A|A|15

Current chains

Chain A

U6 INTRAMOLECULAR STEM-LOOP RNA

Nearby chains