HL_1TN2_002

3D structure

PDB id

1TN2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTALLOGRAPHIC AND BIOCHEMICAL INVESTIGATION OF THE LEAD(II)-CATALYZED HYDROLYSIS OF YEAST PHENYLALANINE T-RNA

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AGA(OMC)U(OMG)AA(YG)A(PSU)(5MC)U

Length

13 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC, OMG, YG, PSU, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1TN2_002 not in the Motif Atlas

Homologous match to HL_6GSL_221

Geometric discrepancy: 0.4333

The information below is about HL_6GSL_221

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06285.3

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

1TN2|1|A|A|29
1TN2|1|A|G|30
1TN2|1|A|A|31
1TN2|1|A|OMC|32
1TN2|1|A|U|33
1TN2|1|A|OMG|34
1TN2|1|A|A|35
1TN2|1|A|A|36
1TN2|1|A|YG|37
1TN2|1|A|A|38
1TN2|1|A|PSU|39
1TN2|1|A|5MC|40
1TN2|1|A|U|41

Current chains

Chain A

TRNAPHE

Nearby chains