HL_1VQL_043

3D structure

PDB id

1VQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'DCSN' bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

CGGCGAAAG

Length

9 nucleotides

Bulged bases

1VQL|1|0|A|1710

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VQL_043 not in the Motif Atlas

Homologous match to HL_4V9F_043

Geometric discrepancy: 0.0428

The information below is about HL_4V9F_043

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.1

Basepair signature

cWW-F

Number of instances in this motif group

10

Unit IDs

1VQL|1|0|C|1705
1VQL|1|0|G|1706
1VQL|1|0|G|1707
1VQL|1|0|C|1708
1VQL|1|0|G|1709
1VQL|1|0|A|1710
1VQL|1|0|A|1711
1VQL|1|0|A|1712
1VQL|1|0|G|1713

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain P

50S ribosomal protein L19E