HL_1VQP_032

3D structure

PDB id

1VQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'RAP' bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.25 Å

Loop

Sequence

ACUCAUACU

Length

9 nucleotides

Bulged bases

1VQP|1|0|U|1279

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VQP_032 not in the Motif Atlas

Homologous match to HL_4V9F_032

Geometric discrepancy: 0.0448

The information below is about HL_4V9F_032

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_77082.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

8

Unit IDs

1VQP|1|0|A|1274
1VQP|1|0|C|1275
1VQP|1|0|U|1276
1VQP|1|0|C|1277
1VQP|1|0|A|1278
1VQP|1|0|U|1279
1VQP|1|0|A|1280
1VQP|1|0|C|1281
1VQP|1|0|U|1282

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain O

50S ribosomal protein L18e

Chain Y

50S ribosomal protein L32E