HL_1VVJ_129

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

GAAGCAACGC

Length

10 nucleotides

Bulged bases

1VVJ|1|XA|G|971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VVJ_129 not in the Motif Atlas

Homologous match to HL_4LFB_021

Geometric discrepancy: 0.1537

The information below is about HL_4LFB_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

1VVJ|1|XA|G|963
1VVJ|1|XA|A|964
1VVJ|1|XA|A|965
1VVJ|1|XA|G|966
1VVJ|1|XA|C|967
1VVJ|1|XA|A|968
1VVJ|1|XA|A|969
1VVJ|1|XA|C|970
1VVJ|1|XA|G|971
1VVJ|1|XA|C|972

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XI

30S ribosomal protein S9

Chain XJ

30S ribosomal protein S10

Chain XM

30S ribosomal protein S13

Chain XV

Transfer RNA; tRNA

Chain XY

messenger RNA