HL_1VVJ_190

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

UUUACCAAAAA

Length

11 nucleotides

Bulged bases

1VVJ|1|YA|A|1780, 1VVJ|1|YA|C|1781, 1VVJ|1|YA|C|1782, 1VVJ|1|YA|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VVJ_190 not in the Motif Atlas

Homologous match to HL_7RQB_045

Geometric discrepancy: 0.0993

The information below is about HL_7RQB_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.5

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

1VVJ|1|YA|U|1777
1VVJ|1|YA|U|1778
1VVJ|1|YA|U|1779
1VVJ|1|YA|A|1780
1VVJ|1|YA|C|1781
1VVJ|1|YA|C|1782
1VVJ|1|YA|A|1783
1VVJ|1|YA|A|1784
1VVJ|1|YA|A|1785
1VVJ|1|YA|A|1786
1VVJ|1|YA|A|1787

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y7

50S ribosomal protein L35

Chain YD

50S ribosomal protein L2

Chain YW

50S ribosomal protein L22