Motif HL_43613.5 Version HL_43613.5 of this group appears in releases 3.80 to 3.86

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5		6		7	1-7	2-6	3-5
1	HL_8C3A_046	8C3A	0.0692	4	1	LSU rRNA	U	2113	C	2114	U	2115	U	2119	A	2120	A	2121	A	2123	cWW	tWH	tWH
2	HL_5TBW_046	5TBW	0.0000	4	1	LSU rRNA	U	2135	C	2136	U	2137	U	2141	A	2142	A	2143	A	2145	cWW	tWH	tWH
3	HL_4WF9_043	4WF9	0.1590	4	X	LSU rRNA	U	1804	U	1805	U	1806	A	1810	A	1811	A	1812	A	1814	cWW	tWH
4	HL_5J7L_178	5J7L	0.1515	4	DA	LSU rRNA	U	1777	U	1778	U	1779	A	1783	A	1784	A	1785	A	1787	cWW	tWH	tWH
5	HL_7RQB_045	7RQB	0.1610	4	1A	LSU rRNA	U	1777	U	1778	U	1779	A	1783	A	1784	A	1785	A	1787	cWW	tWH	tWH
6	HL_4V9F_047	4V9F	0.1624	4	0	LSU rRNA	U	1833	C	1834	U	1835	A	1839	A	1840	C	1841	A	1843	cWW	tWH	tWH

3D structures

Complete motif including flanking bases

Sequence	Counts
UCUAAUUAAAA	2
UUUAUCAAAAA	1
UUUAUUAAAAA	1
UUUACCAAAAA	1
UCUAGUAACAA	1

Non-Watson-Crick part of the motif

Sequence	Counts
CUAAUUAAA	2
UUAUCAAAA	1
UUAUUAAAA	1
UUACCAAAA	1
CUAGUAACA	1

Release history

Release	3.80	3.81	3.82	3.83	3.84	3.85	3.86
Date	2024-01-31	2024-02-28	2024-03-27	2024-04-24	2024-05-22	2024-06-19	2024-07-17
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (6)
Basepair signature: cWW-tWH-tWH-F
Heat map statistics: Min 0.06 | Avg 0.11 | Max 0.19

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