HL_1VWW_023

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUUGGUAAGCAGA

Length

13 nucleotides

Bulged bases

1VWW|1|5|G|1869

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_00415.1

Basepair signature

cWW-R-R-R

Number of instances in this motif group

5

Unit IDs

1VWW|1|5|U|1861
1VWW|1|5|U|1862
1VWW|1|5|U|1863
1VWW|1|5|G|1864
1VWW|1|5|G|1865
1VWW|1|5|U|1866
1VWW|1|5|A|1867
1VWW|1|5|A|1868
1VWW|1|5|G|1869
1VWW|1|5|C|1870
1VWW|1|5|A|1871
1VWW|1|5|G|1872
1VWW|1|5|A|1873

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 7

5S ribosomal RNA; 5S rRNA