Motif HL_00415.1 Version HL_00415.1 of this group appears in releases 1.16 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1VX2_003 | 1VX2 | 0.8298 | 1 | 2 | 18S ribosomal RNA | G | 156 | U | 157 | A | 158 | A | 159 | U | 160 | C | 162 | |||
| 2 | HL_1VWW_023 | 1VWW | 0.6627 | 7 | 5 | 28S ribosomal RNA | C | 1763 | G | 1764 | A | 1765 | A | 1766 | A | 1767 | G | 1769 | cWW | ||
| 3 | HL_1U9S_001 | 1U9S | 0.3543 | 1 | GNRA | A | RIBONUCLEASE P | G | 84 | U | 85 | A | 86 | A | 87 | C | 88 | C | 90 | cWW | |
| 4 | HL_3Q1Q_002 | 3Q1Q | 0.0000 | 1 | B | RNase P RNA | G | 77 | U | 78 | A | 79 | A | 80 | C | 81 | C | 83 | cWW | ||
| 5 | HL_3P49_002 | 3P49 | 0.3201 | 1 | A | Glycine riboswitch | G | 41 | U | 42 | A | 43 | A | 44 | A | 45 | C | 47 | cWW | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUAACGC | 2 |
| GUAAUUC | 1 |
| UUUGGUAAGCAGA | 1 |
| GUAAAUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAACG | 2 |
| UAAUU | 1 |
| UUGGUAAGCAG | 1 |
| UAAAU | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in HL_00415.1 | Only in the parent motif |
|---|---|---|---|
| HL_98523.2 Compare | HL_3Q1Q_002, HL_3P49_002, HL_1U9S_001 | HL_1VX2_003, HL_1VWW_023 | HL_4BPP_003 |
Children motifs
| Child motif | Common motif instances | Only in HL_00415.1 | Only in the child motif |
|---|---|---|---|
| HL_57963.1 Compare | HL_3Q1Q_002, HL_3P49_002, HL_1U9S_001 | HL_1VX2_003, HL_1VWW_023 | HL_4W21_023 |
- Annotations
-
- (4)
- GNRA (1)
- Basepair signature
- cWW-R-R-R
- Heat map statistics
- Min 0.32 | Avg 0.54 | Max 0.93
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