3D structure

PDB id
1VWW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
UGACUGAACGCCUCUAAGUCA
Length
21 nucleotides
Bulged bases
1VWW|1|5|G|4694
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_55035.1
Basepair signature
cWW-cWW-R-R-R-R-R-R
Number of instances in this motif group
5

Unit IDs

1VWW|1|5|U|4685
1VWW|1|5|G|4686
1VWW|1|5|A|4687
1VWW|1|5|C|4688
1VWW|1|5|U|4689
1VWW|1|5|G|4690
1VWW|1|5|A|4691
1VWW|1|5|A|4692
1VWW|1|5|C|4693
1VWW|1|5|G|4694
1VWW|1|5|C|4695
1VWW|1|5|C|4696
1VWW|1|5|U|4697
1VWW|1|5|C|4698
1VWW|1|5|U|4699
1VWW|1|5|A|4700
1VWW|1|5|A|4701
1VWW|1|5|G|4702
1VWW|1|5|U|4703
1VWW|1|5|C|4704
1VWW|1|5|A|4705

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:

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