Motif HL_55035.1 Version HL_55035.1 of this group appears in releases 1.16 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 3-8 | 3-9 | 3-10 | 4-7 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3J7A_012 | 3J7A | 0.2341 | 0 | A | SSU rRNA | A | 528 | U | 529 | U | 530 | U | 531 | A | 532 | A | 533 | A | 534 | A | 535 | C | 536 | C | 537 | U | 538 | cWW | tSH | tSH | ntSH | |||
| 2 | HL_4BPP_014 | 4BPP | 0.0000 | 0 | A | 18S RRNA | G | 514 | U | 515 | G | 516 | U | 517 | A | 518 | A | 519 | A | 520 | U | 521 | C | 522 | U | 523 | C | 524 | cWW | cWW | ntSH | ||||
| 3 | HL_1Y0Q_008 | 1Y0Q | 0.2771 | 0 | A | Group I catalytic intron | G | 224 | A | 225 | G | 226 | U | 227 | A | 228 | A | 229 | C | 230 | G | 231 | A | 232 | A | 233 | C | 234 | cWW | ncWW | ntSH | ||||
| 4 | HL_1VX2_038 | 1VX2 | 0.5852 | 0 | 6 | P/E tRNA | G | 30 | A | 31 | U | 32 | U | 33 | G | 34 | A | 35 | A | 36 | A | 37 | A | 38 | U | 39 | C | 40 | cWW | ncWW | ncWW | ||||
| 5 | HL_1VWW_063 | 1VWW | 0.6137 | 0 | 5 | 28S ribosomal RNA | G | 4495 | A | 4496 | U | 4497 | U | 4498 | G | 4499 | U | 4500 | U | 4501 | C | 4502 | A | 4503 | C | 4504 | C | 4505 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUUUAAAACCU | 1 |
| GUGUAAAUCUC | 1 |
| GAGUAACGAAC | 1 |
| GAUUGAAAAUC | 1 |
| GAUUGUUCACC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUUAAAACC | 1 |
| UGUAAAUCU | 1 |
| AGUAACGAA | 1 |
| AUUGAAAAU | 1 |
| AUUGUUCAC | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in HL_55035.1 | Only in the parent motif |
|---|---|---|---|
| HL_33875.1 Compare | HL_4BPP_014, HL_1Y0Q_008 | HL_3J7A_012, HL_1VWW_063, HL_1VX2_038 | HL_1FJG_030 |
Children motifs
| Child motif | Common motif instances | Only in HL_55035.1 | Only in the child motif |
|---|---|---|---|
| HL_19066.1 Compare | HL_3J7A_012, HL_4BPP_014, HL_1Y0Q_008 | HL_1VWW_063, HL_1VX2_038 | HL_4W21_063 |
- Annotations
- Basepair signature
- cWW-cWW-R-R-R-R-R-R
- Heat map statistics
- Min 0.23 | Avg 0.42 | Max 0.70
Coloring options: