HL_1VWW_066

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAGCUCCCUCGCUG

Length

14 nucleotides

Bulged bases

1VWW|1|5|U|5026, 1VWW|1|5|C|5027

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31147.1

Basepair signature

cWW-R-R-R-R-R-R-R

Number of instances in this motif group

4

Unit IDs

1VWW|1|5|C|5018
1VWW|1|5|A|5019
1VWW|1|5|G|5020
1VWW|1|5|C|5021
1VWW|1|5|U|5022
1VWW|1|5|C|5023
1VWW|1|5|C|5024
1VWW|1|5|C|5025
1VWW|1|5|U|5026
1VWW|1|5|C|5027
1VWW|1|5|G|5028
1VWW|1|5|C|5029
1VWW|1|5|U|5030
1VWW|1|5|G|5031

Current chains

Chain 5

28S ribosomal RNA

Nearby chains